To cite package ‘lineagefreq’ in publications use:

  Gao C (2026). _lineagefreq: Modelling Pathogen Lineage Frequency
  Dynamics and Forecasting Variant Replacement from Genomic
  Surveillance Data_. R package version 0.5.1,
  <https://CRAN.R-project.org/package=lineagefreq>.

A BibTeX entry for LaTeX users is

  @Manual{,
    title = {lineagefreq: Modelling Pathogen Lineage Frequency Dynamics and Forecasting Variant Replacement from Genomic Surveillance Data},
    author = {Cuiwei Gao},
    year = {2026},
    note = {R package version 0.5.1},
    url = {https://CRAN.R-project.org/package=lineagefreq},
  }