# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
# --------------------------------------------
 
cff-version: 1.2.0
message: 'To cite package "survinger" in publications use:'
type: software
license: MIT
title: 'survinger: Design-Adjusted Inference for Pathogen Lineage Surveillance'
version: 0.1.1
identifiers:
- type: doi
  value: 10.32614/CRAN.package.survinger
abstract: Provides tools for optimizing sequencing resource allocation and estimating
  pathogen lineage prevalence under real-world genomic surveillance conditions. Implements
  constrained allocation optimization for limited sequencing capacity across multiple
  regions and sample sources. Includes Horvitz-Thompson and post-stratified estimators
  that account for unequal sequencing rates, delay-adjusted nowcasting for right-censored
  reporting data, and combined design-weighted delay-corrected inference with uncertainty
  propagation.
authors:
- family-names: Gao
  given-names: Cuiwei
  email: 48gaocuiwei@gmail.com
preferred-citation:
  type: manual
  title: 'survinger: Design-Adjusted Inference for Pathogen Lineage Surveillance'
  authors:
  - family-names: Gao
    given-names: Cuiwei
    email: 48gaocuiwei@gmail.com
  year: '2026'
  notes: R package version 0.1.1
  url: https://github.com/CuiweiG/survinger
repository: https://cuiweig.r-universe.dev
repository-code: https://github.com/CuiweiG/survinger
commit: 1a4906d4c20dfa5ccd823a98bdeee17523ba98ea
url: https://cuiweig.github.io/survinger
date-released: '2026-04-16'
contact:
- family-names: Gao
  given-names: Cuiwei
  email: 48gaocuiwei@gmail.com